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search [2013/02/26 15:55] – rkiss | search [2013/02/26 16:15] – [Results] rkiss | ||
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This interface was designed to quickly search the [[purchasable|Purchasable compounds collection]] of the mcule database. | This interface was designed to quickly search the [[purchasable|Purchasable compounds collection]] of the mcule database. | ||
- | The query molecule can be specified by the [[sketcher|Drawer]] or by entering mcule IDs, SMILES strings or InChIs. | + | The query molecule can be specified by the [[sketcher|Drawer]] or by entering mcule IDs, [[http:// |
- | The following search types are available | + | The following search types are available: |
- | **[[similaritysearch|Similarity]]** can retrieve close analogs of a query molecule (e.g. an [[http:// | + | **[[similaritysearch|Similarity |
- | **[[substructuresearch|Substructure]]** can be used to find all molecules that contain a specific substructure (e.g. the main scaffold of a reference ligand). | + | **[[substructuresearch|Substructure |
- | **[[exactsearch|Exact]]** can be useful when looking for a specific | + | **[[exactsearch|Exact |
+ | === Find Chemicals - Multiple === | ||
- | Queries can be drawn by the [[sketcher|molecule sketcher]], which can be hidden and reopened by clicking on the “Hide/ | + | This interface runs [[exactsearch|exact searches]] with multiple query molecules. |
- | You can select on which [[collmanagement|collection]] the search will be performed | + | It can be very useful for ordering a set of ligands |
- | The “Maximum hits” field is set to 1,000 by default. If you don' | + | Note that different query types might store different level of information about your query molecules. Searching for mcule IDs is the most straightforward and effective way to retrieve a set of molecules from the mcule database. For example, if you have downloaded the [[purchasable|Purchasable compounds collection]] of the mcule database from [[http:// |
+ | |||
+ | ===== Results ===== | ||
+ | |||
+ | * Molecules satisfying search criteria | ||
+ | In case of [[similaritysearch|similarity searching]]: | ||
+ | * Tanimoto coefficient showing | ||
+ | * Hits will be ordered by similarity score | ||
+ | |||
+ | For queries submitted by Find Chemicals Single a maximum of 1000 hits will be displayed. If you would like to get more than 1000 hits, you can use the Workflow Builder with the. Please note however, that size of the output collections in the [[freepackage|Free package]] are limited |
search.txt · Last modified: 2013/10/10 16:05 by flack