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search [2013/02/26 16:00] – [How to use] rkiss | search [2013/10/10 16:05] (current) – flack | ||
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- | Extremely fast and easy-to-use web interface that helps to find purchasable chemicals in the high quality database of mcule. | + | Extremely fast and easy-to-use web interface that helps to quickly |
===== When to use ===== | ===== When to use ===== | ||
- | [[https:// | + | [[https:// |
===== How to use ===== | ===== How to use ===== | ||
- | [[https:// | + | [[https:// |
=== Find Chemicals - Single === | === Find Chemicals - Single === | ||
- | This interface was designed to quickly search the [[purchasable|Purchasable compounds collection]] of the mcule database. | + | The query molecule can be specified by the [[sketcher|Drawer]] or by entering mcule IDs, [[http:// |
- | + | ||
- | The query molecule can be specified by the [[sketcher|Drawer]] or by entering mcule IDs, SMILES strings or InChIs. | + | |
The following search types are available: | The following search types are available: | ||
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**[[similaritysearch|Similarity searching]]** can be used to retrieve close analogs of a query molecule (e.g. an [[http:// | **[[similaritysearch|Similarity searching]]** can be used to retrieve close analogs of a query molecule (e.g. an [[http:// | ||
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**[[exactsearch|Exact searching]]** can be used to find a specific compound (e.g. a reference ligand). | **[[exactsearch|Exact searching]]** can be used to find a specific compound (e.g. a reference ligand). | ||
+ | === Find Chemicals - Multiple === | ||
+ | |||
+ | This interface runs [[exactsearch|exact searches]] with multiple query molecules. | ||
+ | |||
+ | It can be very useful for ordering a set of ligands in one step. Virtual screening hit lists with mcule IDs, [[http:// | ||
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+ | Note that different query types might store different level of information about your query molecules. Searching for mcule IDs is the most straightforward and effective way to retrieve a set of molecules from the mcule database. For example, if you have downloaded the [[purchasable|Purchasable compounds collection]] of the mcule database from [[https:// | ||
- | Queries can be drawn by the [[sketcher|molecule sketcher]], which can be hidden and reopened by clicking on the “Hide/ | + | ===== Results ===== |
- | You can select on which [[collmanagement|collection]] the search | + | * Molecules satisfying search criteria |
+ | In case of [[similaritysearch|similarity searching]]: | ||
+ | * Tanimoto coefficient showing | ||
+ | * Hits will be ordered by similarity score | ||
- | The “Maximum | + | For queries submitted by Find Chemicals Single a maximum of 1000 hits will be displayed. If you would like to get more than 1000 hits, you can use the Workflow Builder with the. Please note however, |
search.1361894415.txt.gz · Last modified: 2013/02/26 16:00 by rkiss