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ordancat [2013/10/09 08:22] rkissordancat [2013/10/09 08:23] rkiss
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-== B) Search analogs for multiple hits by a single search == 
  
-If you have multiple hits containing common structural elements (e.g. multiple analogs of the same scaffold), it make sense to include all your hits in a single search as multiple queries. 
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-1. Go to **[[http://mcule.com/???|"FIND CHEMICALS / MULTIPLE QUERY SIMILARITY"]]** 
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-2. Specify your queries in SMILES, mcule ID, InChI or SDF formats (use the tabs on the left to **"Paste text"** or **"Upload file"**) 
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-3. You can set the similarity **"Scoring method"** under **"Advanced options"**: **//Best//** scoring method will pick the similarity score to the most similar query molecule. **//Average//** scoring method will calculate an average similarity score to all query molecules. 
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-4. Under **"Advanced options"** you can also set the **"Descriptor"** used for the similarity search (**OpenBabel Linear Fingerprint**, **OpenBabel MACCS Keys**, **Indigo Similarity Fingerprint**) 
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-5. Click on **"SEARCH"** 
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-6. After the search was finished and the most similar compounds were displayed, click on the orange **"QUOTE"** button in the top right corner 
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-7. Fill out the quote form 
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-8. Click on either **"INSTANT QUOTE"** (quote will be generated on-the-fly - **[[https://mcule.com/pricing|subscription required]]**) or **"NEXT-DAY QUOTE"** (we will send you a quote by e-mail in 24-48 hours) 
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-**__[[usecases|Go back to use cases >>]]__** 
  
 == C) Search analogs for multiple hits (one hit at a time) == == C) Search analogs for multiple hits (one hit at a time) ==
ordancat.txt · Last modified: 2014/01/01 15:52 by flack